PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G280600.2
Common NameB456_008G280600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 178aa    MW: 20369.6 Da    PI: 6.6919
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G280600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.79.2e-165498149
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49
                        + y+GVr++   g+Wv+e+r+p   +k+ r++lg+f ta++Aa+a++ a
  Gorai.008G280600.2 54 PVYRGVRRRN-PGKWVSEVREP---NKKSRIWLGTFPTADMAARAHDVA 98
                        68*****887.9******9998...347******************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-115498IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-2355100IPR001471AP2/ERF domain
PROSITE profilePS5103218.01755112IPR001471AP2/ERF domain
SMARTSM003802.6E-1755118IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1555101IPR016177DNA-binding domain
CDDcd000182.24E-205698No hitNo description
PRINTSPR003671.0E-85667IPR001471AP2/ERF domain
PRINTSPR003671.0E-87894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDFLVQDYDM VDSGSVSESG TDRPVNFSDD YVMLASSYPK RRAGRKKFRE TRHPVYRGVR  60
RRNPGKWVSE VREPNKKSRI WLGTFPTADM AARAHDVAET FRTAEHSSGN SRNDAKRSEN  120
TEMEKGFYLD EEALFGTQRF WANMAAGMMM SPPRSGHDGG WEEHEVDDYV PLWSYSI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4090601e-158DQ409060.1 Gossypium hirsutum DREB1-like transcription factor (DREB1L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440211.11e-123PREDICTED: dehydration-responsive element-binding protein 1D isoform X1
SwissprotQ9M0L02e-40DRE1A_ARATH; Dehydration-responsive element-binding protein 1A
TrEMBLA0A0D2Q3A71e-130A0A0D2Q3A7_G
STRINGPOPTR_0012s13870.16e-52(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.11e-41dehydration response element B1A
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]